rs236479865 SNP Detail

Summary

• ID
  rs236479865
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53214923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTCTAC ACAGCCGGGC
  AGTGGTGGCG CATGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAGGCA GATTTACAAG
  TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT TCCGGGACAG CCAGGGCAAC ACAGAGAAAC
  CCTGTCTCAA AAAAAGACCA AAAAATCCTC TACGCAGATC TTTGAAAGAA AAATCAAAAA
  C
  AAAAAAAAAA AAACCAAAAC AAAACAAAAA ACCAACCAAA CAACAACAAA ATCAGAATGA
  TCCAGTCATC ATGACGACAC CTGTAATTTC TTGGGGTTTT TGGTGTTTTG TTTTTTGAGA
  CAGTTTGTGT GTGCAGCCTT GGTTTTCCTG AAACTCCCTG TGTAGATGAG GCTGGCCGTG
  AATCCCATCA AGTGTTGGAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383395992	MGP_WTSI_11_53137598	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236479865					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383395992	MGP_WTSI_11_53137598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53214923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	495 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	269 bp proximal
Rr447002	regulatory region 447002	539 bp proximal
Rr447003	regulatory region 447003	594 bp proximal
Tssr101382	transcription start site region 101382	578 bp upstream
Tssr107917	transcription start site region 107917	494 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	593 bp upstream