rs236480856 SNP Detail

Summary

• ID
  rs236480856
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8618026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAATAA GAGATAATTA
  TATAAAAGAG AATTATTATA TAAGCTTAGT TTTAATTTAG ATTTTTTTGG TTTGGCATAC
  TAGATTCTGA TATGTGCTGT AGTTTTATTT ACAAAGCCTT TGTGCCCTCA ATATTTCTTC
  TTATAATTAA GTTTGTCTCT CTGTGGTGAT AAAATTTCAT TTTGTCAGGT TCATTTTAAA
  S
  GTCTATGAGT TTATCATCTC ACTACCCATC TTTAGGTATT TCCTAAGAGT ATCAAGTTGC
  TAAAAATCTC AATAATTACA TACTATATTT ATCTTATTAA AACACTTTTG TAGCTAAAAG
  TCTTTTCCGG ATCAAATTTA TTATCATAAT ATTTTTTTGT ATCTGTCAAA TTAAAAGTTT
  ACTGTTGCCA GGCGTGGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463551	CHEV_5_8568026	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236480856					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8618026 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	426 bp distal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	916 bp downstream
Tssr45119	transcription start site region 45119	903 bp downstream