rs236481313 SNP Detail

Summary

• ID
  rs236481313
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134486048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGCTCG AGACCCTCGG
  CCGCTGCCGC TGCGAGCCAG GCGGCCAGGA GTACCGGGAC GCAGAAGCCG CCTGTCATGG
  TGGCGCCTGT GAGGTAGCTC AGCTCTCTGA GGGCGGGGAG CAGTGGCTGG GCTTCTCACC
  CCAAGCAACC GCCTTCACAG AGGTCTGAGG AGAGGCCAAC CCGCCTCTGC GCCGTGCTCC
  S
  AGCCACGCCT GCCGCGCCTC CCTCAGCCTC TTATCTGCCC GCCCGGCAAG GCCACGCCCA
  GCCACCCTGA CCACGCCCCC AACGCACTGT GGGAAGGCGG TTGCCAAAGC AACCGTCTGC
  AGTTTCCCAA GGCAACGGCC TGCTCTTCCT GCTGACTGTC TGGCTGAAAA TATACAAATG
  ACCCAATGCT GTTTTACCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355758895	MGP_WTSI_2_134469864	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236481313					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355758895	MGP_WTSI_2_134469864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134486048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12319	CpG island 12319	within coordinates
Rr55684	regulatory region 55684	within coordinates
Rr397337	regulatory region 397337	within coordinates
Tmx4	thioredoxin-related transmembrane protein 4	7 bp upstream
Tssr26507	transcription start site region 26507	86 bp upstream
Tssr26508	transcription start site region 26508	70 bp upstream
Tssr26509	transcription start site region 26509	19 bp upstream
Tssr26510	transcription start site region 26510	within coordinates
Tssr26511	transcription start site region 26511	27 bp downstream
Tssr26512	transcription start site region 26512	49 bp downstream