rs236483247 SNP Detail

Summary

• ID
  rs236483247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74721697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCCACGGA GAGGAGGGGC AAGTAGGGAA
  AGCGGAAACA GCGAGGAAGC CTGGTTCCAT CTTCTCACCC CCACCCAAGC CACGTGTGCG
  CGCGCGGTGG GCGGGGCCAT CCCTGGCGCG GCCCCGCCCT CAGTGAGACG CCGCGGCCCT
  R
  CGGGCGGGGG CTCCGGTCCG GGCTTTGGCT GCGGCCCCGG TGTAGTAgcg ggggcggcgg
  ccgggggcag cgcggcTCCT TCCCTTGTTG TGTGTGTCGG TGCCTCCTCG CCATCTTGTT
  GCAAAGCCCT TTCTTGTCGG CGGGACTCCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323749909	CHEV_11_74644373	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236483247					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74721697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Cpgi3247	CpG island 3247	1866 bp proximal
Gm74357	predicted gene, 74357	56 bp upstream
Mnt	max binding protein	49 bp upstream
Rr402717	regulatory region 402717	340 bp downstream
Rr450976	regulatory region 450976	766 bp distal
Rr450977	regulatory region 450977	within coordinates
Rr450978	regulatory region 450978	105 bp proximal
Rr450979	regulatory region 450979	346 bp proximal
Tssr102911	transcription start site region 102911	17 bp upstream
Tssr102912	transcription start site region 102912	36 bp upstream
Tssr102913	transcription start site region 102913	64 bp upstream
Tssr102914	transcription start site region 102914	343 bp upstream
Tssr109144	transcription start site region 109144	969 bp upstream
Tssr109145	transcription start site region 109145	182 bp upstream
Tssr109146	transcription start site region 109146	923 bp downstream
Tssr109147	transcription start site region 109147	1121 bp downstream
Tssr109148	transcription start site region 109148	1311 bp downstream
Tssr109149	transcription start site region 109149	1348 bp downstream