rs236485216 SNP Detail

Summary

• ID
  rs236485216
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84104368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTTCCA AACAGTCACA
  GATCAAACAG TGTCACCCGC CGGAGCGCCA CTTCGTGCCC CGCGCTGCCC CCGGGGGGCC
  TTGGCCGCCA GGATCGCCGC TTCTTCCGAG GAGAAATCTA ATGCAAACAC ATTTTGATCG
  TGGATTTTTT GGCCGGTCTT GATCTTCCAA GAGAAAAAAA ATTCGAAAAA CACACACACA
  M
  AAAAACCCCA CACACACCCT CCAAAAAAAA AAAAAAAAGC CAACAACAAC CCGGAGAGTG
  GGCACCGAGG GGGTGAAGAA CGGACATTCA CTGGGTGGGC GAGATGAGCG TGTACTGTCC
  CCCCCAAACT CCTGGGAGAG AGGAGATGCG CTCTCCCTCT CTCCTCTTTT CAGTGAAATA
  TAACACACAT TCGGATCGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401475713	MGP_WTSI_18_84255635	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236485216					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475713	MGP_WTSI_18_84255635	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84104368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10336	CpG island 10336	within coordinates
Cpgi10337	CpG island 10337	978 bp proximal
Gm56504	predicted gene, 56504	323 bp downstream
Gm58899	predicted gene, 58899	1434 bp upstream
Ptgr3	prostaglandin reductase 3	1882 bp upstream
Rr353212	regulatory region 353212	within coordinates
Tshz1	teashirt zinc finger family member 1	within coordinates
Tssr152202	transcription start site region 152202	1404 bp upstream
Tssr152203	transcription start site region 152203	1834 bp upstream
Tssr152204	transcription start site region 152204	1943 bp upstream
Tssr152205	transcription start site region 152205	1975 bp upstream
Tssr154120	transcription start site region 154120	252 bp upstream
Tssr154121	transcription start site region 154121	14 bp downstream
Tssr154122	transcription start site region 154122	136 bp downstream
Tssr154123	transcription start site region 154123	169 bp downstream
Tssr154124	transcription start site region 154124	206 bp downstream
Tssr154125	transcription start site region 154125	503 bp downstream
Tssr154126	transcription start site region 154126	1459 bp downstream