rs236485216 SNP Detail

Summary

• ID
  rs236485216
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:84104368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTTCCA AACAGTCACA
  GATCAAACAG TGTCACCCGC CGGAGCGCCA CTTCGTGCCC CGCGCTGCCC CCGGGGGGCC
  TTGGCCGCCA GGATCGCCGC TTCTTCCGAG GAGAAATCTA ATGCAAACAC ATTTTGATCG
  TGGATTTTTT GGCCGGTCTT GATCTTCCAA GAGAAAAAAA ATTCGAAAAA CACACACACA
  M
  AAAAACCCCA CACACACCCT CCAAAAAAAA AAAAAAAAGC CAACAACAAC CCGGAGAGTG
  GGCACCGAGG GGGTGAAGAA CGGACATTCA CTGGGTGGGC GAGATGAGCG TGTACTGTCC
  CCCCCAAACT CCTGGGAGAG AGGAGATGCG CTCTCCCTCT CTCCTCTTTT CAGTGAAATA
  TAACACACAT TCGGATCGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401475713	MGP_WTSI_18_84255635	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236485216					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475713	MGP_WTSI_18_84255635	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84104368 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56504	predicted gene, 56504			323 bp downstream
Gm58899	predicted gene, 58899			1434 bp upstream
Ptgr3	prostaglandin reductase 3			1882 bp upstream
Rr542061	regulatory region 542061			151 bp proximal
Rr542062	regulatory region 542062			1251 bp proximal
Rr542063	regulatory region 542063			1436 bp proximal
Rr542064	regulatory region 542064			1938 bp proximal
Tshz1	teashirt zinc finger family member 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr152202	transcription start site region 152202			1404 bp upstream
Tssr152203	transcription start site region 152203			1834 bp upstream
Tssr152204	transcription start site region 152204			1943 bp upstream
Tssr152205	transcription start site region 152205			1975 bp upstream
Tssr154120	transcription start site region 154120			252 bp upstream
Tssr154121	transcription start site region 154121			14 bp downstream
Tssr154122	transcription start site region 154122			136 bp downstream
Tssr154123	transcription start site region 154123			169 bp downstream
Tssr154124	transcription start site region 154124			206 bp downstream
Tssr154125	transcription start site region 154125			503 bp downstream
Tssr154126	transcription start site region 154126			1459 bp downstream