rs236486080 SNP Detail

Summary

• ID
  rs236486080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99665189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCTGTG TTCTGGCAGC
  TGAAGCTTCT ATTGCAATAA CATACCCCAA GTAAATTAGC CTACATAGAG TTGGCATATC
  AGTATCTAAC AAGTACTCAA GGAAGTAGAT ATCAAGTTTC AAACAATTTT ATATTAAAAT
  TGAGCTTAAA AATTCAGAGT AGGCCGAGCG GTGGTGGTGC ACGCCTTTAA TCCCAGCACT
  Y
  GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGC CTGGTCCACA GAGTGAGTTC
  CAGGACAGCC AGGGCTGCAC AGAAAAACCC TGTCTTGAAA AGGCCAAAAA AAAAAAAAAA
  ATCCAGAGTA GTTAGTTGCT CATGCCTGTA ATCCCAACAA TCAGGAAGAG GAGGGGGGCT
  TGAGTGAGAG AGAGATCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325081765	CHEV_15_99597739	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236486080					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99665189 () rs orientation: forward

Symbol	Name	Function Class
Cers5	ceramide synthase 5	within coordinates
Gm17058	predicted gene 17058	within coordinates