rs236491637 SNP Detail

Summary

• ID
  rs236491637
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:168661885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGCCCT GCTGCCAAAA
  TCTCAGAGAA CTCAGCCAAG CTCACACATA TTGAACCACA CCTCCAGCAC TCCTGAAACC
  ACTAAATCAT TATTTTATCT GTTATTATTT ACTAATACTG CAAAAACTTA ATATATATAT
  TGGATTATCC TCAAACTGTG AGCACTTGTT TGGGAATATA TATATATTGT ATATATATAT
  W
  TTTTGTATAT ATATATAAAT TAGTGAGCTT ACCAGTTTAG CACTGATAAA CTCAAACACT
  CAAAGAGGTA CATACACTTA TGTAAAAAGA AGTTTCATTA ACTAAATTTC TGTATTCATT
  GTTCTAATTA GGAGATGTTT TATCTGAAAT TGTGCTTTCA GTCACCATCG ATGAAGATTC
  TTCCTCAAGT CCTGTATTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss405172713	MGP_WTSI_X_166316821	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236491637					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss405172713	MGP_WTSI_X_166316821	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:168661885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23060	CpG island 23060	710 bp proximal
Mid1	midline 1	within coordinates
Rr695287	regulatory region 695287	468 bp proximal
Rr695288	regulatory region 695288	786 bp proximal
Tssr162728	transcription start site region 162728	707 bp upstream
Tssr162729	transcription start site region 162729	866 bp upstream