rs236496803 SNP Detail

Summary

• ID
  rs236496803
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48529755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACTCCA CTTTTGAAAT
  AAGTGCTAAT TCCACCTAGC GAAAGTAATG ACCACCAACT CAAATTTTTT GGTTGAATTA
  AGCAAGCTGT CTCCCTAAAG TGGGGTTTGA GAGGACAGCT CTGAACATAG GAAAATTGAG
  GTATTTTTTT AGTAGCCCCA AAACTTCAAA GATAGGGGAT TCCAAGGATT TTTGGTTACA
  W
  AGAAACTTGG CAGAACATCT CAAAATTATT TGGCAGAGCA TCGTATATTA TCAGGGTGGA
  GGTCTCGGTA TAAGGGTGTG GAAAAATTCC AGAAAAGGGT CAAGACAGGG TCAAATCCAA
  GTTTTACAGC AAACAGGAAT GAACTTTCTT CCACCTTTTA AGGAGATGGC TTCAGTAGTT
  CTTAAGTGAC TTGCCTAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321793652	CHEV_6_48502820	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236496803					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48529755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1636 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	1183 bp downstream
Lrrc61	leucine rich repeat containing 61	1977 bp upstream
Rr399635	regulatory region 399635	1697 bp upstream
Rr629686	regulatory region 629686	130 bp proximal
Rr629687	regulatory region 629687	815 bp proximal
Rr629688	regulatory region 629688	1942 bp proximal
Rr629689	regulatory region 629689	1995 bp proximal
Tssr56137	transcription start site region 56137	1955 bp upstream
Tssr60734	transcription start site region 60734	1836 bp downstream
Tssr60735	transcription start site region 60735	1853 bp downstream
Tssr60736	transcription start site region 60736	1896 bp downstream