rs236499154 SNP Detail

Summary

• ID
  rs236499154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43443799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACATGCA AGATTACCAT
  AACCCAGAGC AGTTATAGCT CCACAACTCT GAGCAAAATA TATCTCCCTG ATTCTGGATA
  ATGAGATGCA AATCCAAGAC TACCTGTCAG GACAATAGAT TTCCCCTGCT CTAACTGTCT
  ATACCAAAGT GGCATGTGCA TATCATAAAA CTTTTTTTAA TTAAATACAA TGATAATTTC
  R
  TAATATTGAA CATTTAAGGG AACTGGAAAA TAATTTAAAT TATTAAATAT AACCAGTGGG
  GTAAAGTGAA AGGACAGAAT ACAAGAAGGA GAAAGAAAAA TAGGAGCGAT GAACAGAACC
  AGGCCTCAGG TGCAGAGTCT GCACGCACTA CAATAATTGC TCAAAGACTT ACCAAATCCA
  TGGCAGCAAG ACTGTGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267189	CHEV_2_43409307	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236499154					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43443799 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	1542 bp upstream
Rr556278	regulatory region 556278	801 bp proximal
Rr556279	regulatory region 556279	1250 bp proximal
Rr556280	regulatory region 556280	1578 bp proximal
Tssr17589	transcription start site region 17589	1534 bp upstream
Tssr17590	transcription start site region 17590	1558 bp upstream
Tssr17591	transcription start site region 17591	1575 bp upstream