rs236499505 SNP Detail

Summary

• ID
  rs236499505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTTAGG ACAATCAAAC
  TCAGGCTGGT CAGTGACTGA CTAAACGAGT GTTCTCAGAT TCCAGAAGCC TGTTCTCATC
  GCACAGGCAG TTTGTGGACC CCTTACTTCT TCTTTGGCCC TTAGGCAAAT TCCTCCCAAT
  GGGAAGAGAA TAAATTGGAG GGGCTAGGGG AAATTTGGGA GGGCAGAACT AGTGTTTGGT
  R
  TTTAATGGGA AGAGGTTTGT GAGTCCCAAA AATAACAGGG TCCTTAAGTG AGGTTTGTAA
  ATCCCCAAAA TAACAGGATC AGATTCAAGT GACTTCAATG AAGCTATTAA AAATACGTTC
  CAAGCCAGGT GTGGTAGCAC GTTTGTAATC TCAGCATTCC AGAGGTGGAG GCAGGAGGTT
  CAGAAGTTCG AGGCCAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353671	CHEV_7_109399957	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236499505					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	459 bp distal
Rhog	ras homolog family member G	1325 bp upstream
Rr652562	regulatory region 652562	1366 bp distal
Rr652563	regulatory region 652563	830 bp distal
Rr652564	regulatory region 652564	501 bp distal
Tssr2354	transcription start site region 2354	1167 bp downstream
Tssr68328	transcription start site region 68328	1750 bp downstream
Tssr68329	transcription start site region 68329	1729 bp downstream
Tssr68330	transcription start site region 68330	1188 bp downstream
Tssr73941	transcription start site region 73941	1969 bp upstream
Tssr73942	transcription start site region 73942	1884 bp upstream
Tssr73943	transcription start site region 73943	1357 bp upstream
Tssr73944	transcription start site region 73944	1320 bp upstream
Tssr73945	transcription start site region 73945	1305 bp upstream
Tssr73946	transcription start site region 73946	1109 bp upstream
Tssr73947	transcription start site region 73947	964 bp upstream
Tssr73948	transcription start site region 73948	928 bp upstream
Tssr73949	transcription start site region 73949	895 bp upstream
Tssr73950	transcription start site region 73950	848 bp upstream