rs236504439 SNP Detail

Summary

• ID
  rs236504439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122523441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGAAGTTA AAAACAAAAG
  CGTACACCCG GCCCTGGAGC AAGATTACTC TCCCGGGCCT TCTCCCCTCC CCTCTACTCT
  CCCGGTTTCC CTCCCAAACC CGCTTAGCAA AAACCAAAAC AAGCCAGAGC CCCTTCCCAG
  CGGCTCCGGA AGCACCACTG CGGGCGCGTC CCTGTGGTCG TGCTCCTCCC CTGCCCGGCT
  Y
  GCTCTGACCC TGGAGGGGCG GGGAAGCCGG GGGGGTCTGG ACCAGGCCAC CGGGAAGCCT
  GGGTGCCGCA GCTTGCCCGG GTCGCCCCCA GTGAGGACTG TCGCCTTTGG TCCCCCAATA
  GTCCTCTGGT CATCCCTCTT CTGGCTGCGT CGCCGCAAGG AGGATTTTCG CGGAGCTTTG
  CGGCGCGCAC ACAAAGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508367	MGP_WTSI_3_122432710	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236504439					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508367	MGP_WTSI_3_122432710	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122523441 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13771	CpG island 13771			within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific			Intron
				mRNA-UTR
Rr584392	regulatory region 584392			835 bp distal
Rr584393	regulatory region 584393			849 bp distal
Rr584394	regulatory region 584394			212 bp distal
Rr584395	regulatory region 584395			within coordinates
Rr584396	regulatory region 584396			670 bp proximal
Tssr31509	transcription start site region 31509			797 bp downstream
Tssr31510	transcription start site region 31510			777 bp downstream
Tssr31511	transcription start site region 31511			658 bp downstream
Tssr31512	transcription start site region 31512			610 bp downstream
Tssr31513	transcription start site region 31513			559 bp downstream
Tssr31514	transcription start site region 31514			57 bp downstream
Tssr31515	transcription start site region 31515			58 bp upstream
Tssr31516	transcription start site region 31516			78 bp upstream
Tssr31517	transcription start site region 31517			126 bp upstream
Tssr31518	transcription start site region 31518			255 bp upstream
Tssr31519	transcription start site region 31519			321 bp upstream
Tssr31520	transcription start site region 31520			344 bp upstream
Tssr31521	transcription start site region 31521			424 bp upstream
Tssr31522	transcription start site region 31522			460 bp upstream