rs236509477 SNP Detail

Summary

• ID
  rs236509477
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139452160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCAGG AGGCTAAAGT
  AAGATGGCAC CATCTACCCT TTCCAGCAAC TCAGGCTGCT CTCCCATAAC CAAACTCAGT
  CCTTTGGGGA TGCATTTGGA CTGAGGTCCC CATTTTCTTG TTGGCTGAAT GCCAGAGTCA
  TTCTCCACAT ATGGGGTCAC TCAATTCCTT AGCAGGTAGC TCCTTCATCC TCAAAAAACA
  S
  TAGAAGAGTC TCCTGAGCCA GGCCTCTTTC CTCAAGTCTC TCTCTTCTAG AAGACCCTCT
  TCTAAGGGGT CAGTCACTGC AGCAAGGTGT CAATACTTGT TCATATCTCT AGAGCTTTAA
  GGAGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTATGCACA CATGTCTGTG
  AGATGACTGC AAGGGTTACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320527415	CHEV_2_139435976	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236509477					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139452160 () rs orientation: forward

Symbol	Name	Function Class
Rr566030	regulatory region 566030	within coordinates
Sptlc3	serine palmitoyltransferase, long chain base subunit 3	Intron