rs236522166 SNP Detail

Summary

• ID
  rs236522166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAGAGA CAGATGAGCT
  AACACGTAAA ACATAAAAAG AGTGTGCTGC ACAGATGTTG GGTGGTTTGC TTGTGGCCAG
  TCAGTTCCTC ACGCCTACTA GATATCTCCC TTTCAAGGCT GAGCTCTGAT TGATTTCTTT
  CTACCTTTTT TTTTTTTTTT TTTTTTTTGA GACAGGGTCT CACTGTATAG CCCTGGCTGT
  Y
  CTGGAACTCA CTATGTAGAT GAGACTTGCC TCAAACTCAC AGAGATCCAT TTAACCTCTG
  TCTCCTGAGT GCTGGGATAA AGGCATGGAC TTGCCCAGCC AAGCCTGATT TTTTTTTTTT
  TTTGTATGCA TGGAGGCATC AGAATATTTT GTTTTAGATA ACCTAAGTCC CTACTTCTGC
  TGGTGTGTCT CTGTACTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552095	MGP_WTSI_1_137746557	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236522166					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552095	MGP_WTSI_1_137746557	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777718 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	683 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr226	transcription start site region 226	1970 bp upstream
Tssr227	transcription start site region 227	535 bp upstream
Tssr9016	transcription start site region 9016	1992 bp downstream
Tssr9017	transcription start site region 9017	1954 bp downstream
Tssr9018	transcription start site region 9018	1936 bp downstream
Tssr9019	transcription start site region 9019	1903 bp downstream
Tssr9020	transcription start site region 9020	1132 bp downstream
Tssr9021	transcription start site region 9021	1112 bp downstream
Tssr9022	transcription start site region 9022	624 bp downstream
Tssr9023	transcription start site region 9023	550 bp downstream
Tssr9024	transcription start site region 9024	514 bp downstream
Tssr9025	transcription start site region 9025	224 bp downstream
Tssr9026	transcription start site region 9026	26 bp downstream
Tssr9027	transcription start site region 9027	77 bp upstream
Tssr9028	transcription start site region 9028	117 bp upstream
Tssr9029	transcription start site region 9029	697 bp upstream
Tssr9030	transcription start site region 9030	732 bp upstream
Tssr9031	transcription start site region 9031	791 bp upstream
Tssr9032	transcription start site region 9032	1374 bp upstream
Tssr13891	transcription start site region 13891	1960 bp upstream
Tssr13892	transcription start site region 13892	1893 bp upstream
Tssr13893	transcription start site region 13893	1876 bp upstream
Tssr13894	transcription start site region 13894	1127 bp upstream
Tssr13895	transcription start site region 13895	1083 bp upstream
Tssr13896	transcription start site region 13896	556 bp upstream
Tssr13897	transcription start site region 13897	528 bp upstream
Tssr13898	transcription start site region 13898	757 bp downstream
Tssr13899	transcription start site region 13899	825 bp downstream
Tssr13900	transcription start site region 13900	835 bp downstream
Tssr13901	transcription start site region 13901	1396 bp downstream