rs236522590 SNP Detail

Summary

• ID
  rs236522590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122824586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACATGGA AAGTATCCAC
  ATAATAGATT ATTATGGGAG CTGCTGGTTT TCTTTTTTTA AACTAAAGGT TGAGTGTAGT
  ACTATGTATA ATAGCTAAGA TATAGAATCT GCTTAGGCAT TGGTTGGTAG TTGGGTGGAT
  AATGGCACTT ACTACACACA CGTGCACATA CACATGTACA CACATGCGTG TGCATGCACA
  Y
  ACACAGTGCA GTGTTATTCA GCCATAACAA TGAGTGAAAT ACTGGTTTTA ACAGAATGGA
  TGTGAATGGA CACATACGTA TCACATAGTC TCATATATGA GGGCCAGAAA TGTCAACCTG
  AGCAGGCTGG GGGGCGGGTG CAGAGTAGTT TAGTTGGTAG GATGCTTAAC GACTATGCAT
  GAAGCCCTGG TTTTGAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914732	MGP_WTSI_6_122797645	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236522590					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914732	MGP_WTSI_6_122797645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122824586 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	342 bp upstream
Tssr58710	transcription start site region 58710	531 bp upstream
Tssr62965	transcription start site region 62965	1092 bp upstream
Tssr62966	transcription start site region 62966	124 bp downstream
Tssr62967	transcription start site region 62967	162 bp downstream
Tssr62968	transcription start site region 62968	239 bp downstream
Tssr62969	transcription start site region 62969	543 bp downstream
Tssr62970	transcription start site region 62970	576 bp downstream
Tssr62971	transcription start site region 62971	641 bp downstream
Tssr62972	transcription start site region 62972	743 bp downstream
Tssr62973	transcription start site region 62973	802 bp downstream
Tssr62974	transcription start site region 62974	869 bp downstream
Tssr62975	transcription start site region 62975	980 bp downstream
Tssr62976	transcription start site region 62976	1026 bp downstream
Tssr62977	transcription start site region 62977	1089 bp downstream
Tssr62978	transcription start site region 62978	1166 bp downstream
Tssr62979	transcription start site region 62979	1197 bp downstream
Tssr62980	transcription start site region 62980	1222 bp downstream
Tssr62981	transcription start site region 62981	1241 bp downstream
Tssr62982	transcription start site region 62982	1402 bp downstream
Tssr62983	transcription start site region 62983	1859 bp downstream
Tssr62984	transcription start site region 62984	1929 bp downstream
Tssr62985	transcription start site region 62985	1972 bp downstream