rs236524591 SNP Detail

Summary

• ID
  rs236524591
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTCTCA GCAGAGGCCA
  GAATGTACAG GATGTTCATG TGCCATGGGC AGAGTTCATT TTCCAGCGCA CTATACCACC
  CAGGTTTCCC AGGAGCCTGT GGGAGGCTTG CATGCTGCCC TTCACTTCTC TTTCTCTCTC
  TCCCCAGATC GAGGCTCAGT GAGACACTGA CAAGTAGCTA GAGCTGCAGC AGGAAAAACA
  M
  GGCTAGATTG ATCCTGACCC TTTCCTAACC CTGCCCCTCA CTGCTAAGTG ACTCCACAGA
  CAACTTCCCG AAAAGGCTGG CCATACTCCA TAAAGCCCTG CATATTCGGG CAGAGAATTC
  TAGTACCTAG GGCAAAACAG GACAAGTGGG AAGGTCACTT CCACCCTCTT GGGTAGTAGA
  CAACCCTGTC CACAGGCCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234347	CHEV_9_123702418	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236524591					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622365 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	Intron
Tssr92157	transcription start site region 92157	1234 bp upstream
Tssr92158	transcription start site region 92158	1228 bp upstream
Tssr92159	transcription start site region 92159	1204 bp upstream
Tssr92160	transcription start site region 92160	829 bp upstream
Tssr92161	transcription start site region 92161	808 bp upstream
Tssr92162	transcription start site region 92162	1525 bp downstream