rs236535667 SNP Detail

Summary

• ID
  rs236535667
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23119094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC ACCTTCAAGT TTGGCCGCAC
  M
  GCCCGGGCTG CCGTCGCCCG CACCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325768035	CHEV_19_23216220	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236535667					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23119094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	within coordinates
Gm56648	predicted gene, 56648	575 bp upstream
Gm59174	predicted gene, 59174	1103 bp downstream
Klf9	Kruppel-like transcription factor 9	mRNA-UTR
Rr405898	regulatory region 405898	829 bp downstream
Rr545290	regulatory region 545290	1577 bp distal
Rr545291	regulatory region 545291	627 bp distal
Rr545292	regulatory region 545292	494 bp distal
Tssr155578	transcription start site region 155578	1619 bp downstream
Tssr155579	transcription start site region 155579	889 bp downstream
Tssr155580	transcription start site region 155580	779 bp downstream
Tssr155581	transcription start site region 155581	763 bp downstream
Tssr155582	transcription start site region 155582	726 bp downstream
Tssr155583	transcription start site region 155583	697 bp downstream
Tssr155584	transcription start site region 155584	653 bp downstream
Tssr155585	transcription start site region 155585	593 bp downstream
Tssr155586	transcription start site region 155586	467 bp downstream
Tssr155587	transcription start site region 155587	63 bp downstream
Tssr155588	transcription start site region 155588	29 bp downstream
Tssr158621	transcription start site region 158621	1077 bp upstream
Tssr158622	transcription start site region 158622	757 bp upstream
Tssr158623	transcription start site region 158623	326 bp downstream
Tssr158624	transcription start site region 158624	640 bp downstream