rs236536707 SNP Detail

Summary

• ID
  rs236536707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157405072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGAAGA GGGGGTGGTG
  GCTGGGACAA TGAGCATGAG GTGTGGCTTG GCCCCTCCTC CACCAAGCTT AATGCTCCAG
  ACCCCAGGAT CACCCTAAGG CTGGCCATCC TGTCTTGATT TTCCAACCCT CCAGCTGGAC
  ACTCCCTCTC TTAGTTTTCT CAGTTCATCC CTAAGGGCCT TATCAGATCG ATAGCTTGCC
  Y
  TTTCCCCTCC CATTGCAGCA GGGAGGGTGG GCTGGCCCCT TAGTTCCCTT TCTTGGTTAG
  CCAGAGCTGT TCACAAGTGT CAGCTGACTG CCTCACCAAA TGGTCCTGCC ACCTGTTAAG
  CCTCATTTCT GGCTTTACCC GTCCCTGTCT CTGCACACCT GCTCCTATGC CAATGAGTTA
  GAAGGTCACC AGTCTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262063	MGP_WTSI_2_157388888	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236536707					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262063	MGP_WTSI_2_157388888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157405072 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12576	CpG island 12576	1453 bp distal
Gm56190	predicted gene, 56190	705 bp upstream
Nnat	neuronatin	630 bp downstream
Rr568544	regulatory region 568544	within coordinates
Tssr721	transcription start site region 721	695 bp upstream
Tssr21273	transcription start site region 21273	1667 bp downstream
Tssr21274	transcription start site region 21274	1421 bp downstream
Tssr21275	transcription start site region 21275	1369 bp downstream
Tssr21276	transcription start site region 21276	1256 bp downstream
Tssr21277	transcription start site region 21277	1238 bp downstream
Tssr21278	transcription start site region 21278	1205 bp downstream
Tssr21279	transcription start site region 21279	1120 bp downstream
Tssr21280	transcription start site region 21280	1008 bp downstream
Tssr21281	transcription start site region 21281	934 bp downstream
Tssr21282	transcription start site region 21282	861 bp downstream
Tssr21283	transcription start site region 21283	832 bp downstream
Tssr27185	transcription start site region 27185	1268 bp upstream
Tssr27186	transcription start site region 27186	1138 bp upstream