rs236538828 SNP Detail

Summary

• ID
  rs236538828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:72991933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGACCCAA GCCGGGATTT TTAACCTCAG
  CCTCAACTTG GCTCGTCTCT GGCGCCTCAC TATTTTCAAC TACCCAAAAT CTCTCCAAAT
  GCTCGGCTCC TCTCGCCTCC ACTGTAACCA CCTATCCTGC CGCCACCCCA GCGACCCCCC
  M
  CCCCCACCCC GACACCCGTT TGTTTATAAA AATCCGGAGG GAAGAGGGGA GGGGAGCCCA
  GGCTGGGGGT GGGGAAGGGC TTGCTCTTTG TTTACATTAA ACAAATGACA GGCAAAGAGC
  TCCAGCAAAG TCTTCCCTGA CCTCGTTCTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324097342	CHEV_12_74046146	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236538828					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:72991933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4744	CpG island 4744	199 bp proximal
Gm26709	predicted gene, 26709	648 bp upstream
Rr265547	regulatory region 265547	within coordinates
Six6	sine oculis-related homeobox 6	260 bp downstream
Tssr113771	transcription start site region 113771	473 bp upstream
Tssr113772	transcription start site region 113772	519 bp upstream
Tssr113773	transcription start site region 113773	531 bp upstream
Tssr113774	transcription start site region 113774	541 bp upstream
Tssr113775	transcription start site region 113775	604 bp upstream
Tssr113776	transcription start site region 113776	628 bp upstream
Tssr116636	transcription start site region 116636	284 bp downstream