rs236542347 SNP Detail

Summary

• ID
  rs236542347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80072522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCTTA CAGAGGACTC
  TGGTTCCCAG CCACCACATG GTGGCTCACA GCCATCTGTA ACGGCATCTG ATGCCCTCTT
  CTGGGGTGTC TGAAGACAGC TACAGTGTAC TCATATACAA AAAAAAAAAA AAAATAATAA
  TAATAATTCT TTACTTTAAA AGAGAGAGAG AGAGCGAGAG AGATTCTCCA AACTGTAGAG
  R
  TTAGTCAAAG GGAAGGGGTA AAGGAAATAA TTCAAGCTGA GGAAAGAAAA TTCTCAAAGG
  CCTCAAGCTA GGAGAGGAGA ACCGAAATAA ATTTGGCTGA AATGTTAGAG CAACAGATGC
  CCAAGGTACT TGTTAGGTGC TTCTTTGTTT CTTCTTTCAG TGGAATGAAG AGATGTAATC
  GTTCTCTCTT CAGCAGAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323761711	CHEV_11_79995198	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236542347					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80072522 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm113	DNA segment, Chr 11, Boehm 113	623 bp distal
Rr386348	regulatory region 386348	within coordinates
Rr452448	regulatory region 452448	1845 bp distal
Rr452449	regulatory region 452449	112 bp distal
Rr452450	regulatory region 452450	1665 bp proximal
Rr452451	regulatory region 452451	1672 bp proximal
Rr452452	regulatory region 452452	1859 bp proximal