rs236544670 SNP Detail

Summary

• ID
  rs236544670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:75825660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTCGTC AGAGGCCTGC
  TAGCCTGGTG CAAGGTAAAG GTGGCCTCTT GCTTCTGGCT CTCCTTAGCC CAGCTGGGAC
  TTCTTTACTC TCCTCTTTGC TGAATGTTTT AAATCAGAAA TAGGGTACAG ACAAAAGCGC
  CCAGGGTAAG CTGGTAGTAT GTGACTGTGG GTGAGCTATA AGATTTTTCT ACCTCAGTTT
  Y
  TCCACATTGG AAAACAGGAG TTGGGGGCTA TGTAGCTCAT TGACTGAGGT GCATATAAAG
  CCCTTAAAAG TCACTGGCAT AGAAATTCTT CCATTTAGAC CCCTCCTCCC ATTTTGGGGG
  GAGGGGCACA GTCATGCTTT GTTAGCAGAG ATCAAACAAT CTCTCTGCTT CAATCTTTCA
  TAAAAAGCTA GGGTGTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375182964	MGP_WTSI_8_77622931	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236544670					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375182964	MGP_WTSI_8_77622931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75825660 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	Intron
Tssr78053	transcription start site region 78053	1955 bp downstream
Tssr78054	transcription start site region 78054	1929 bp downstream
Tssr78055	transcription start site region 78055	1891 bp downstream
Tssr78056	transcription start site region 78056	1860 bp downstream
Tssr78057	transcription start site region 78057	1818 bp downstream
Tssr78058	transcription start site region 78058	1808 bp downstream
Tssr78059	transcription start site region 78059	1801 bp downstream
Tssr78060	transcription start site region 78060	1787 bp downstream
Tssr78061	transcription start site region 78061	1714 bp downstream
Tssr78062	transcription start site region 78062	196 bp downstream
Tssr78063	transcription start site region 78063	845 bp upstream
Tssr78064	transcription start site region 78064	875 bp upstream
Tssr78065	transcription start site region 78065	924 bp upstream
Tssr78066	transcription start site region 78066	974 bp upstream
Tssr78067	transcription start site region 78067	1004 bp upstream
Tssr78068	transcription start site region 78068	1043 bp upstream
Tssr78069	transcription start site region 78069	1088 bp upstream
Tssr78070	transcription start site region 78070	1137 bp upstream
Tssr78071	transcription start site region 78071	1186 bp upstream
Tssr78072	transcription start site region 78072	1207 bp upstream
Tssr78073	transcription start site region 78073	1268 bp upstream
Tssr78074	transcription start site region 78074	1320 bp upstream
Tssr78075	transcription start site region 78075	1345 bp upstream
Tssr78076	transcription start site region 78076	1384 bp upstream
Tssr78077	transcription start site region 78077	1476 bp upstream
Tssr81819	transcription start site region 81819	184 bp upstream
Tssr81820	transcription start site region 81820	1554 bp downstream