rs236548023 SNP Detail

Summary

• ID
  rs236548023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTG GAAAAAAAAT TTTTTTTTTT
  Y
  CTAAAAGAAC AAGCCCTTGG GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss642478901	FVB_NJ_10_24635320	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	T	C	C	T	C	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T	C	T	C	T	C	C	C	T	T	C	T	C	C	C	C	T	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236548023					SNP	T	T	C	C	T	C	C	T	C	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T	C	T	C	T	C	C	C	T	T	C	T	C	C	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642478901	FVB_NJ_10_24635320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791412 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	mRNA-UTR
Tssr92746	transcription start site region 92746	106 bp upstream
Tssr92747	transcription start site region 92747	179 bp upstream
Tssr97085	transcription start site region 97085	21 bp upstream
Tssr97086	transcription start site region 97086	24 bp downstream
Tssr97087	transcription start site region 97087	58 bp downstream
Tssr97088	transcription start site region 97088	116 bp downstream
Tssr97089	transcription start site region 97089	135 bp downstream
Tssr97090	transcription start site region 97090	166 bp downstream
Tssr97091	transcription start site region 97091	557 bp downstream
Tssr97092	transcription start site region 97092	577 bp downstream
Tssr97093	transcription start site region 97093	601 bp downstream
Tssr97094	transcription start site region 97094	617 bp downstream
Tssr97095	transcription start site region 97095	631 bp downstream
Tssr97096	transcription start site region 97096	896 bp downstream
Tssr97097	transcription start site region 97097	1170 bp downstream
Tssr97098	transcription start site region 97098	1318 bp downstream