rs236551322 SNP Detail

Summary

• ID
  rs236551322
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTCCGAG AGGCCATCTG
  GCAGTTGCTT AAGATCAGAA GTGAAGTCTG CCAGTTCCTC CCAGGCAGGT GGCCCAGATT
  ACAGTTGACC TGTTCTGGTG TGGCTAAAAA TTGTCCCATG TGGTTACAAA CCATTAGACC
  AGGGTCTGAT GAATTGCTCA GAATATTTCT GGACACCCAA ATACAGACCC TGGCTTAAGG
  M
  CCTGTCCATA CAGTAGGTTT AGCTTGGCTA CACCAAAGGA AGCCATACAG AGGCTAATAT
  CAGAGTATTC TTGGAAGAGA CAGGAGAAAA TGAAAGCCAG TTTCTGCTCT TACCTTATGT
  GCTTGTGTTC AGACTCCCAA ACATCAGGAG TGTCAGATAA ACTGGTCTGA ATCTCTGTCT
  GAAGCATGGA ACTGAAAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815796	CHEV_6_70675952	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236551322					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702942 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	488 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	477 bp upstream
Rr158	regulatory region 158	7 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	523 bp downstream
Rr399685	regulatory region 399685	111 bp downstream
Rr399686	regulatory region 399686	553 bp upstream
Tssr1880	transcription start site region 1880	892 bp upstream
Tssr56956	transcription start site region 56956	125 bp downstream
Tssr56957	transcription start site region 56957	472 bp upstream
Tssr56958	transcription start site region 56958	519 bp upstream
Tssr56959	transcription start site region 56959	537 bp upstream
Tssr56960	transcription start site region 56960	560 bp upstream
Tssr56961	transcription start site region 56961	574 bp upstream
Tssr56962	transcription start site region 56962	582 bp upstream
Tssr56963	transcription start site region 56963	631 bp upstream
Tssr56964	transcription start site region 56964	646 bp upstream
Tssr56965	transcription start site region 56965	652 bp upstream
Tssr56966	transcription start site region 56966	663 bp upstream
Tssr56967	transcription start site region 56967	678 bp upstream
Tssr56968	transcription start site region 56968	702 bp upstream
Tssr56969	transcription start site region 56969	738 bp upstream
Tssr56970	transcription start site region 56970	751 bp upstream
Tssr56971	transcription start site region 56971	771 bp upstream
Tssr56972	transcription start site region 56972	797 bp upstream
Tssr56973	transcription start site region 56973	835 bp upstream
Tssr56974	transcription start site region 56974	867 bp upstream
Tssr56975	transcription start site region 56975	900 bp upstream
Tssr61321	transcription start site region 61321	524 bp downstream
Tssr61322	transcription start site region 61322	689 bp downstream
Tssr61323	transcription start site region 61323	704 bp downstream
Tssr61324	transcription start site region 61324	794 bp downstream
Tssr61325	transcription start site region 61325	860 bp downstream
Tssr61326	transcription start site region 61326	895 bp downstream
Tssr61327	transcription start site region 61327	909 bp downstream
Tssr61328	transcription start site region 61328	1000 bp downstream