rs236553773 SNP Detail

Summary

• ID
  rs236553773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112640590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT GGGCCGCCGC GGTGCCGGCC
  R
  CAGGACGCTG CTCGGTCCGC TCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss921570630	MGP_WTSI_12_112674156	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A	A	A	A	G	G	A	A	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs236553773					SNP	G	G	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A	A	A	A	G	G	A	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921570630	MGP_WTSI_12_112674156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112640590 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	within coordinates
Gm30150	predicted gene, 30150	332 bp upstream
Rr369631	regulatory region 369631	1274 bp upstream
Tssr115391	transcription start site region 115391	256 bp upstream
Tssr117877	transcription start site region 117877	129 bp upstream
Tssr117878	transcription start site region 117878	70 bp upstream
Tssr117879	transcription start site region 117879	37 bp downstream
Tssr117880	transcription start site region 117880	187 bp downstream
Tssr117881	transcription start site region 117881	218 bp downstream
Tssr117882	transcription start site region 117882	597 bp downstream
Tssr117883	transcription start site region 117883	618 bp downstream
Tssr117884	transcription start site region 117884	670 bp downstream