rs236558440 SNP Detail

Summary

• ID
  rs236558440
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110725318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG GAGGAGGGGT CTTGAAGAGG
  W
  AACTGATGGC TGCTCTGGAA GCAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323194745	CHEV_9_110798754	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236558440					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110725318 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	351 bp upstream
Rr192781	regulatory region 192781	318 bp distal
Rr205816	regulatory region 205816	317 bp distal
Rr205817	regulatory region 205817	within coordinates
Rr207403	regulatory region 207403	1719 bp distal
Tssr87434	transcription start site region 87434	500 bp downstream
Tssr87435	transcription start site region 87435	469 bp downstream
Tssr87436	transcription start site region 87436	698 bp upstream