rs236559609 SNP Detail

Summary

• ID
  rs236559609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109906525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTATG ATGACTTTAA
  AATAGCCTTT GAATATGTGG GTTATATAAA GAGGCTGCAT TACTAGGCTG CATATGATGG
  CACACACCCA CAATCCTGAG AGGGCATTGC CTGCTTATCA CCCTAGGCTC TCATGATCTC
  ATCCTATGAT GGTATTATTC AATAACTCCT AAGTCAGGAC AAAATAACTA AAGATGCCAG
  Y
  TTCCATGGAA GGAGCCTGTC GTTAGCTGTG TGAGCACTAG TTCTGGAGCA GGGATAGTGG
  GTGAGGACTG GGAGGACACA GGGCTTGTCC ACAATGGGAC AAGCCCCACA ACGGCATCAT
  TCCAGAGCCA CAAGTAGGAC CAGTAACAGC CTTGGCTTTT CTCCCCCCAC CCCCTCCAGT
  TCTGACTGCA GCTATGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322395869	CHEV_7_117450832	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236559609					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109906525 () rs orientation: forward

Symbol	Name	Function Class
Rr159222	regulatory region 159222	1524 bp distal
Rr159223	regulatory region 159223	1125 bp distal
Rr159224	regulatory region 159224	325 bp distal
Sbf2	SET binding factor 2	695 bp downstream