rs236571020 SNP Detail

Summary

• ID
  rs236571020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23894571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCCCT CCAGTTCTGG
  GGAGTCAAGT TAGGGATCAG GCCATATCTT AAAGTTAAAG ATTCTTTTAT TAATAAGTCT
  CCCTCCCCTC CAAACATTAT CCCCACAATA AATATCACCC CCCTTGGGAG ATGGTTGTTT
  CCGTGTGTAC TGGGGCCAGC CCTCCCAGAG GGCCAGCCCC CTTAGTGTTA AGAACAGGTC
  Y
  GTCAATCTGA CCCACTCCTA GGGCTAAAAC TCAGGGAGTG GCATTATAGC CCCTCCGAGT
  GGGTGGGACC CAGTGTTGTG TCTGCCCCTC AAGTCAGCCA GACTGCCAGG ACTTGTGGGG
  AACAAGAGAT TCCCTTGTGC AAATGCTGCA GTTCCTTAGT ATGGGTCGCT TTGTGACCCA
  GATTGAGGCT CTCTGTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840181	MGP_WTSI_17_23812564	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236571020					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840181	MGP_WTSI_17_23812564	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23894571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	1484 bp distal
Cpgi8683	CpG island 8683	843 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	370 bp downstream
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	1852 bp downstream
Thoc6	THO complex 6	1715 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	within coordinates
Tssr142940	transcription start site region 142940	1945 bp downstream
Tssr142941	transcription start site region 142941	1610 bp downstream
Tssr142942	transcription start site region 142942	1596 bp downstream
Tssr146636	transcription start site region 146636	1710 bp upstream
Tssr146637	transcription start site region 146637	493 bp upstream
Tssr146638	transcription start site region 146638	254 bp downstream
Tssr146639	transcription start site region 146639	965 bp downstream
Tssr146640	transcription start site region 146640	990 bp downstream
Tssr146641	transcription start site region 146641	1044 bp downstream
Tssr146642	transcription start site region 146642	1063 bp downstream
Tssr146643	transcription start site region 146643	1835 bp downstream
Tssr146644	transcription start site region 146644	1880 bp downstream