rs236571405 SNP Detail

Summary

• ID
  rs236571405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGCCGG GCAGTGATGG
  CACATGCCTT TAATCCCAGC ACTCAGAAGG CAGAGGCAGG TGGATTTCTG AGTTCGAGGC
  CAGCCTGGTC TACAGAGAGA GTTCCAGGGC AGCCAGGGCT ACGCAGAGAA ACCTTGTCTC
  GAAAAACCAA AATAAATAAA TAAATATATA TATTTTTTTA AACCTAGAAA CAAGATAGAG
  R
  GATGGCTAAC TGGCTAAGAG TGGTGCACCC ACCCACCCTG TCCCCTTTGT CTTTCTATGT
  AGCGCTGGCT GTCCTGTAAG TCTGTATGTA GACTAGGCAG GCCTTGAATT CAGAGATTCT
  TCTAGCTCTG CATCCCAAAC GCTGGAATTA AGGAATAAAA GAACCAAGTA CTGTTTGTTC
  TTCCAGGAGA CCCCAGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C57BL/6J	C57L/J	SPRET/EiJ
ss382237237	MGP_WTSI_11_3072774	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C57BL/6J	C57L/J	SPRET/EiJ
rs236571405					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237237	MGP_WTSI_11_3072774	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122771 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2457	CpG island 2457			190 bp distal
Cpgi2458	CpG island 2458			493 bp proximal
Rr441481	regulatory region 441481			321 bp distal
Rr441482	regulatory region 441482			1489 bp distal
Rr441483	regulatory region 441483			555 bp distal
Rr441484	regulatory region 441484			within coordinates
Rr441485	regulatory region 441485			420 bp proximal
Rr441486	regulatory region 441486			1202 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)			Intron
				Noncoding-Transcript-Variant
Tssr106448	transcription start site region 106448			24 bp downstream
Tssr106449	transcription start site region 106449			548 bp downstream