rs236579824 SNP Detail

Summary

• ID
  rs236579824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59438902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGCTG GAACAGGTGA
  CAAAACAAAA GTTCCAGCTA CTTGCTGGAC GACGCCCTCC TTGGCACGTT AGGAATCGAA
  CGGGGAGAGA CACGTGGTGA GAAAGACATG GAAGACAGGA CAACCGTGTA TTCTAGAAAC
  CGAGGGACCG TTTTAAGGTG GGGACAAAAG GTTAGAGAAA TATATGGCAG AGTTAAAGAA
  M
  TCTGCTCTGA GAGTAGGGTC AGCATCAGGG CGTGAGGGGA TCCGGGAAGG GGCAGGTGAT
  CCTCTGAATT TTGGAGAGAA TCAGAAATGG AGTGTTCAGG GACAGAGTCC ACCACGTCTT
  AAGATTAGTG CAATATTAGA GAAAGGACAA TATTAGATCA AGGAGAAACT GTGAATGTCG
  CTTAGATCTA TGCTTTGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141030	CHEV_4_59451774	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236579824					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59438902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	109 bp distal
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	269 bp upstream
Tssr37430	transcription start site region 37430	727 bp downstream
Tssr37431	transcription start site region 37431	1236 bp upstream
Tssr41933	transcription start site region 41933	597 bp upstream
Tssr41934	transcription start site region 41934	476 bp upstream
Tssr41935	transcription start site region 41935	223 bp upstream