rs236587270 SNP Detail

Summary

• ID
  rs236587270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:45854455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAGGCAAA GCAAGAAGCA GAGGGAGCAA
  GATTGGATGG ATGTGAGCCC AATCCCTGGG TACTAAGTCT GCTGGGAAAA CGTCAGCCAG
  GGCAGCTGGG AGAGCAAGGG GCCAAACACA GACATGCACA CTGGGGTGGA GGGGTAAGAG
  R
  GTATAGGGGA GAGCAAAGTT GGTGTCAGAG CTTTGAAGGG ACAGGACAAA GGGCTGGTGC
  CCCGGGGCTG TGTCATGGAG CCCCTCTGAA GACCTAGAGC TTCAACTCGC TGGACAGGAA
  GAAGTGGAGG GTCTGGTGAG AACGGATCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403370	CHEV_17_45680478	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236587270					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45854455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9190	CpG island 9190	1120 bp proximal
D17Mit35	DNA segment, Chr 17, Massachusetts Institute of Technology 35	857 bp distal
Rr527420	regulatory region 527420	140 bp proximal
Tcte1	t-complex-associated testis expressed 1	850 bp downstream
Tmem151b	transmembrane protein 151B	mRNA-UTR
Tssr148205	transcription start site region 148205	848 bp downstream