rs236592215 SNP Detail

Summary

• ID
  rs236592215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84511166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGTTTA AGTTGCATAT
  CCCTTATCCT CTGGCTGCTG GAGGCTTGCT GAAGGCTGTA TGCTGTTAAT GCTAATTGTG
  ATAGGGGTTT TGGCCTCTGA CTGACTCCTA CCTGTTAGCA TTAACAGGAC ACAAGGCCTG
  TTACTAGCAC TCACATGGAA CAAATGGCCA CCGTGGGAGG ATGACAAGTC CAAGAGTCAC
  Y
  CTGCTGGATG AACGTAGATG TCAGACTCTA TCATTTAATG TGCTAGTCAT AACCTGGTTA
  CTAGGATAGT CCACTGTAAG TGTTACGATA AATGTCATTT AAAAGATAGA TCAGCAGTAT
  CCTAAACAAC ATCTCAACTT CAAGCCCACA TGTTTATTTT TTATCTTGAA TGGAAAGTGA
  AACTTGTATC ATTTTTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261453	CHEV_16_84714523	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236592215					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84511166 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	74 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	943 bp downstream
Rr518521	regulatory region 518521	631 bp distal
Rr518522	regulatory region 518522	within coordinates
Rr518523	regulatory region 518523	1896 bp proximal
Tssr139173	transcription start site region 139173	72 bp downstream
Tssr139174	transcription start site region 139174	707 bp upstream
Tssr139175	transcription start site region 139175	795 bp upstream
Tssr139176	transcription start site region 139176	1331 bp upstream