rs236594923 SNP Detail

Summary

• ID
  rs236594923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTAGTCT CCCTCACAGG
  GTTCAGATTT CAGCTCATTT TCTATGATCT TCAAGATTTC ATGAAAGTAA TTGTGACTGT
  AATCACGCTT TTGCTTCCAA ATGTTTTTAA GTGTTTCTGA AAATTTTAAC CAAATGTTGT
  TGGTGGTCTT TTTGATGGAT TCAACATGAC AGGTTTCTGA ACTCTTTCTA TGTAAATGGT
  W
  TCTTTTTTTC ATTTGAATAT GTTTGTCATA CAAGATTTCA AACTTTTCTC TAGACTTTAT
  TTTTAGTCTT TCCACAATAT TTTTGTCCTT CTTGAAATAC TCCAGAAGGA TATTTTCGGA
  GTCCAAATCA ATGTTAGGCT CTGTGACATG AGGAACATTG GAAGATACAT TATAAATCCA
  ACTTGTCCAA AGTTGACTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372628540	MGP_WTSI_7_113649296	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236594923					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372628540	MGP_WTSI_7_113649296	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104989 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74119	transcription start site region 74119	1811 bp upstream
Tssr74120	transcription start site region 74120	1794 bp upstream
Tssr74121	transcription start site region 74121	1731 bp upstream
Tssr74122	transcription start site region 74122	1714 bp upstream
Tssr74123	transcription start site region 74123	1681 bp upstream
Tssr74124	transcription start site region 74124	1636 bp upstream
Tssr74125	transcription start site region 74125	1625 bp upstream
Tssr74126	transcription start site region 74126	1589 bp upstream
Tssr74127	transcription start site region 74127	1438 bp upstream
Tssr74128	transcription start site region 74128	1358 bp upstream
Tssr74129	transcription start site region 74129	827 bp upstream
Tssr74130	transcription start site region 74130	778 bp upstream
Tssr74131	transcription start site region 74131	567 bp upstream
Tssr74132	transcription start site region 74132	391 bp upstream
Tssr74133	transcription start site region 74133	258 bp downstream
Tssr74134	transcription start site region 74134	485 bp downstream
Tssr74135	transcription start site region 74135	568 bp downstream
Tssr74136	transcription start site region 74136	636 bp downstream
Tssr74137	transcription start site region 74137	702 bp downstream
Tssr74138	transcription start site region 74138	732 bp downstream
Tssr74139	transcription start site region 74139	766 bp downstream
Tssr74140	transcription start site region 74140	821 bp downstream
Tssr74141	transcription start site region 74141	1221 bp downstream
Tssr74142	transcription start site region 74142	1364 bp downstream