rs236601554 SNP Detail

Summary

• ID
  rs236601554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40124502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGGGAG GCTGAGCATC
  TGGGACAGAG CGCAGAGCAC GTTGAAAGGC TTTGGGGACT TTCCTAGGGT GATTTTTTTT
  TTTTAAATGT ACCTGATGCC TCTCAGAAAC CATAGCTTCC AGGCAGACTG GGCAGCACTC
  TAAGACCTGC CTGGCACACA CAGTTATTAG ATAAATGAAT GTACTGGTTT TTTTCCCTCC
  Y
  CTGCTTCTTA AAGTCTCTTC TCTTCAGTCC CCTACTCTAT TTTGAAGCCC ATTTTTTCCC
  TTCTGAGCCC TAGCTTATAT GTCTCTGACC TCAGCCTCCT TACACAGGGT GATCTTGGCC
  AGAGCTTCTC TCTGGGTTTC CTACTGTGTA AATAGAGGCA AAAGACTGGC CTGTCCTTCC
  CAGTCCCTGC TTGCAGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349341420	MGP_WTSI_1_40142187	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C	C	C	T	T	C	C	C	C	T	T	T	C	C	C	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236601554					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C	C	C	T	T	C	C	C	C	T	T	T	C	C	C	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349341420	MGP_WTSI_1_40142187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40124502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi194	CpG island 194	419 bp proximal
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	within coordinates
Rr29353	regulatory region 29353	within coordinates
Rr396010	regulatory region 396010	394 bp upstream
Tssr62	transcription start site region 62	625 bp downstream
Tssr6411	transcription start site region 6411	593 bp downstream
Tssr6412	transcription start site region 6412	572 bp downstream
Tssr6413	transcription start site region 6413	558 bp downstream
Tssr6414	transcription start site region 6414	114 bp downstream
Tssr6415	transcription start site region 6415	749 bp upstream
Tssr11414	transcription start site region 11414	481 bp downstream