rs236606466 SNP Detail

Summary

• ID
  rs236606466
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85275175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATAGCTGT TATAGAAGTG GCGATTAGTG TAATTAGTAG
  GGCTCAGGTG TTGGTGTTGC AGGTATTAAT TGCTTCAATA ATTAGGTCTT TTGAGTAGAA
  C
  CCTGTTAGGA ATGGCATTCC TGTGAGGGCG AGGCTTCCGA TTACTAGGCA TGATGAGGTG
  AATGGTATGG TTTTTGTGAT GTTTCCTATT TTTCGGATG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324460058	CHEV_13_85266661	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236606466					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85275175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	within coordinates
Gm4076	predicted gene 4076	within coordinates
Rr388812	regulatory region 388812	within coordinates
Rr483357	regulatory region 483357	within coordinates
Tssr4134	transcription start site region 4134	174 bp downstream
Tssr120547	transcription start site region 120547	466 bp downstream
Tssr120548	transcription start site region 120548	354 bp downstream
Tssr120549	transcription start site region 120549	287 bp downstream
Tssr123349	transcription start site region 123349	417 bp upstream
Tssr123350	transcription start site region 123350	46 bp upstream
Tssr123351	transcription start site region 123351	31 bp downstream
Tssr123352	transcription start site region 123352	337 bp downstream