rs236621054 SNP Detail

Summary

• ID
  rs236621054
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48228970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAATTAGT AACGTGCTTG
  TTTTGCAAGT GTGAGGACCT GAGCTAGGCT CCCCAGAACC TCTTTTGTTC TAATGGCATA
  GTGCTACATG CTTACAATTC AAGTAATGAG ATGGTAGAGC AGAGAAGCCC AACCATATAG
  CAAGCAAAAA AAAAAAAAAG GAAGGTACCT GAAGAACACC CAGGTTGCCT TTTGACCTGC
  G
  CGCGCCGGGC TCGCACGCAC ACACACACAC ACACACACAC ACACACACAC ACACAGAAAC
  ACACACACAC CCCAAAAGAA AAACAGAGAA AAGAGGGAGA GGGGGAGGGG AGGGGAGGGG
  AGGGGAGGGG AGGGGAGGGG AGGGGAGGGG AGGGTCCTGG AGGACCTGAG TCCTAGCAGC
  TCACACCTGC CTGCAATTTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ
ss377496229	MGP_WTSI_9_48125753	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ
rs236621054					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377496229	MGP_WTSI_9_48125753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48228970 () rs orientation: forward

Symbol	Name	Function Class
Nxpe2	neurexophilin and PC-esterase domain family, member 2	333 bp downstream
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Tssr89370	transcription start site region 89370	1701 bp downstream