rs236623440 SNP Detail

Summary

• ID
  rs236623440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179988657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGCGG TGCCGATTTG
  AGGACTCTGG TAGCTGAAGC CCAGAGGATT CCTTGCATGC TTGCTGGCTT CCCTTGTGCC
  CAGTCCAGGC TAGAATCCGG ACTGTGCTTT CTTTATGAAA ACCATCCTGG CCATCAGCCA
  CCGAGCCTCC CCACAGGTCT TGCACAGAAG GCCGAGGGTA CTGTGCAGAG GAAGACCCAG
  Y
  TCTGGTTCTG CATGGGGCTC AGCTGTCCTG GCCCTTTAGG TCTGAATTGT TCTACAGACT
  TCCTGTTCTC ACCCCTTCTC TCTGCAGTGA GAGGAGATGG TGGGCCCTAC TCCATGGTCA
  GCCTGGGTAA CTCTACACAA AGGGACAGCT CTGGCCATGC TTGCACCTAG TAGGTCTCCA
  GGACTCTGAT AAGCTTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss356758329	MGP_WTSI_2_180081569	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs236623440					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356758329	MGP_WTSI_2_180081569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179988657 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	373 bp upstream
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	within coordinates
Rr572722	regulatory region 572722	440 bp proximal