rs236623468 SNP Detail

Summary

• ID
  rs236623468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66685579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATCATT CTAAAACAGT
  TCACTAAAAC AAATATACTC AAGAGGAAGG GGGAGAGAGG ATGGGGTTAG GCAACTTCCA
  TGAGGACTCA GATGACTGGA TGTGCACACA TTGCTCTCTT TCAAATTTTC CCTTGGCTTG
  AAATTAGAAT ACCAAGTGAC TTCATGTAAT TTACTGTTAT ATATGCAGTA AATATCATTT
  Y
  ATAATGTGTC TGTCTGTAGC AGGGAAAGCT ACGAGCATGC TGCTGGGTGA GAGAGAAGCC
  TATTTCTAAC GAGAAAAATG GCAGGCAGTA GTGCCTACAA ACTGCTCTCT GTCATTCCCA
  TTTCCAAAGT TGAAAACCCC TCAGAGAGTT CAGTGATTTC CCCACAGTCC ACACTTAGTC
  CGAACAGAGC CAGAACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394379565	MGP_WTSI_15_66645292	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236623468					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394379565	MGP_WTSI_15_66645292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66685579 () rs orientation: forward

Symbol	Name	Function Class
Rr369944	regulatory region 369944	210 bp upstream
Rr503568	regulatory region 503568	1964 bp distal
Rr503569	regulatory region 503569	1148 bp distal
Rr503570	regulatory region 503570	647 bp distal
Rr503571	regulatory region 503571	354 bp proximal
Rr503572	regulatory region 503572	400 bp proximal
Rr503573	regulatory region 503573	1208 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr131484	transcription start site region 131484	1486 bp downstream
Tssr131485	transcription start site region 131485	1352 bp downstream
Tssr134585	transcription start site region 134585	1627 bp upstream
Tssr134586	transcription start site region 134586	1595 bp upstream
Tssr134587	transcription start site region 134587	1516 bp upstream
Tssr134588	transcription start site region 134588	1081 bp upstream
Tssr134589	transcription start site region 134589	1050 bp upstream
Tssr134590	transcription start site region 134590	1020 bp upstream
Tssr134591	transcription start site region 134591	998 bp upstream
Tssr134592	transcription start site region 134592	504 bp upstream