rs236625860 SNP Detail

Summary

• ID
  rs236625860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87755623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAGAGA TGAAGTCACC
  CTCCCCTGGC CTGAGGTGAC TTCCTGTACC ATCTCCTGCC CTCTGGGGCC AGTATGGAAG
  ATACAGAAGG AATTTAAGTC AGTGACCTTA GAAAGGACTT TCTGGGCAAT CTCACCCTAA
  AATAGACTGG GGGAGGGGCT GGAATGAGGA TAAACAGGAG GCAGTTTAGG GTTAGAAGTC
  Y
  GCTAATCGTG GCCGCTTCTG TCCATGACTT CTCATGTCCA GGTCTCTGCC TCAGCCCCAG
  GAACTGCCTG GGTCCTAGGG AATGCCGATA GGGCAGAAGA GGTGCCTGGG AAAGGTGACC
  TGTCATTGCA AGCTGAGACC AGAGCATGGG TCCAGAAGAC CCAGGCCCAC TGGCTCTTGC
  TCAAGACTGC CCCTCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358785157	MGP_WTSI_3_87652238	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236625860					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358785157	MGP_WTSI_3_87652238	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87755623 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	1166 bp downstream
Rr579559	regulatory region 579559	1301 bp distal
Rr579560	regulatory region 579560	1040 bp proximal
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29833	transcription start site region 29833	1544 bp downstream
Tssr29834	transcription start site region 29834	1528 bp downstream
Tssr29835	transcription start site region 29835	1462 bp downstream
Tssr29836	transcription start site region 29836	1423 bp downstream
Tssr29837	transcription start site region 29837	1317 bp downstream
Tssr29838	transcription start site region 29838	1249 bp downstream
Tssr29839	transcription start site region 29839	1169 bp downstream
Tssr33958	transcription start site region 33958	1715 bp upstream
Tssr33959	transcription start site region 33959	1515 bp upstream
Tssr33960	transcription start site region 33960	1411 bp upstream
Tssr33961	transcription start site region 33961	789 bp downstream