rs236630270 SNP Detail

Summary

• ID
  rs236630270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGGCAC ACCAAAACAA
  AGACTGTAGG AAGAAACCAC TTTGAAACTT ACTACTTTGT AAGTAGTGAG GAGAAAAAGC
  CCCCAGAGCT AGGAGAAAGA TTCTGTCACA GAGCTGTTGG TCACGGAGAC TCCAGAGGCC
  CCCAAAGCAA CATAATCAGC CCTTTAAGTT GCCTACCAAA ACCCAGGTTT TGTTTGATAT
  Y
  TAGTCTAAGG ATCTATTCCT TGTGGGGTTT TTGTTTGGTT GGTTTGGTTT GCTTTGGGTT
  TGTGTGTGTG TGTGTATGTG TGTGTGTGTG TGTTTGGGAT TTTTAGTTGT TTGCTTTTGT
  TTTTTTGTTT GTTTGTTTCT TTGTTTGTTT GTTTTTTACT ACAGGCCTTG GGAAAGGTTG
  ACAGTTTCTC GCTAAGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269121	CHEV_2_43593766	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236630270					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628258 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	25 bp distal
Rr556297	regulatory region 556297	135 bp proximal
Tssr17595	transcription start site region 17595	1278 bp upstream
Tssr23873	transcription start site region 23873	429 bp downstream
Tssr23874	transcription start site region 23874	770 bp downstream