rs236631893 SNP Detail

Summary

• ID
  rs236631893
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTCGCT GGTAAGTTCC
  GGGTCCCAGT AAGAAACTCT GTCTCAAAAA CTAAGATGGA TGGCTGCTGA AGGCAGACAT
  CTGAGGTTGA CTTCTGGCCT CACAGAGACA CACATGCACC ACCACTGCCA AAGGACGGGG
  ACGGACACAC ACCTTAAATT TTTCTTAAAA AGATTCCTTA TGAAAACTCC CAAGAGCACT
  K
  ATCATGACCT ATTTGGTTAA TTAATGTTTT TGCTGTACAT AAGTAAACCA TGAGATTAGA
  TCTAAGGAGA CCCACTTTAT TGTGTGATCA AAATTTTTTC TTAGAGATTA AAAAAAAACA
  AACCTGAAAT GGAGTCTACA AAGAAAAGGA TGTTTTACAG AGAGAAAACT TTCCAGATTA
  TCTGACTCTA GTCTGTCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377237234	MGP_WTSI_9_37061304	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	T	G	T	G	G	G	T	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236631893					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	T	G	T	G	G	G	T	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377237234	MGP_WTSI_9_37061304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165015 () rs orientation: forward

Symbol	Name	Function Class
Gm10177	predicted gene 10177	538 bp downstream
Gm48081	predicted gene, 48081	1779 bp upstream
Gm65989	predicted gene, 65989	354 bp downstream
Rr676656	regulatory region 676656	955 bp proximal
Rr676657	regulatory region 676657	1685 bp proximal
Rr676658	regulatory region 676658	1790 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	Intron
Tssr88821	transcription start site region 88821	1638 bp downstream
Tssr88822	transcription start site region 88822	1662 bp downstream
Tssr88823	transcription start site region 88823	1684 bp downstream
Tssr88824	transcription start site region 88824	1710 bp downstream
Tssr88825	transcription start site region 88825	1725 bp downstream
Tssr88826	transcription start site region 88826	1811 bp downstream
Tssr88827	transcription start site region 88827	1904 bp downstream
Tssr88828	transcription start site region 88828	1927 bp downstream
Tssr88829	transcription start site region 88829	1950 bp downstream
Tssr88830	transcription start site region 88830	1966 bp downstream