rs236632281 SNP Detail

Summary

• ID
  rs236632281
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGATAACA GGTGCGTGGC
  GTGAACTCCA CAGCAGCGGA GGAGGACGGG GCATTTAGCA GATTAGGAAA GAACCAGCAC
  CCAGTGTTCT GGGTTAGGGT GAGGCTCATC TGGACTCCAG CAGAGCTTAG CTATTTACTT
  CTGTGCTGTG CTGGCCCACG TGTTGGCAGC TGGGAGACGC TAAGGCTTAC CTATGAGGAG
  K
  TCTAGTTTTA GTCTTCAGGC AGAGGGCGTC TCTGCAGCAC TCCCTCACAG GCGAGCCACC
  TATTTTCTTT TCTTCTTGTG TTGTATCTTC TAGATCAGAT CCCTGTATTC GTGACCATGT
  CCCAGAAGAA TGACAGGAAC TTGTCTGATG AGATCTTCCT CAGAGACCTC CCCATCGTCT
  TCGATGTCCT CATTCATGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235223	MGP_WTSI_6_48997641	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236632281					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235223	MGP_WTSI_6_48997641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024576 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1192 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1204 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56327	transcription start site region 56327	1962 bp downstream
Tssr56328	transcription start site region 56328	1884 bp downstream
Tssr56329	transcription start site region 56329	1808 bp downstream
Tssr56330	transcription start site region 56330	1637 bp downstream
Tssr56331	transcription start site region 56331	1592 bp downstream
Tssr56332	transcription start site region 56332	1519 bp downstream
Tssr56333	transcription start site region 56333	1481 bp downstream
Tssr56334	transcription start site region 56334	1471 bp downstream
Tssr56335	transcription start site region 56335	1451 bp downstream
Tssr56336	transcription start site region 56336	1424 bp downstream
Tssr56337	transcription start site region 56337	1401 bp downstream
Tssr56338	transcription start site region 56338	1385 bp downstream
Tssr56339	transcription start site region 56339	1371 bp downstream
Tssr56340	transcription start site region 56340	1181 bp downstream
Tssr56341	transcription start site region 56341	921 bp downstream
Tssr56342	transcription start site region 56342	889 bp downstream
Tssr56343	transcription start site region 56343	343 bp downstream
Tssr56344	transcription start site region 56344	319 bp downstream
Tssr56345	transcription start site region 56345	300 bp downstream
Tssr56346	transcription start site region 56346	247 bp downstream
Tssr56347	transcription start site region 56347	229 bp downstream
Tssr56348	transcription start site region 56348	206 bp downstream
Tssr56349	transcription start site region 56349	106 bp upstream
Tssr56350	transcription start site region 56350	133 bp upstream
Tssr56351	transcription start site region 56351	163 bp upstream
Tssr56352	transcription start site region 56352	176 bp upstream
Tssr56353	transcription start site region 56353	245 bp upstream
Tssr56354	transcription start site region 56354	260 bp upstream
Tssr56355	transcription start site region 56355	285 bp upstream
Tssr56356	transcription start site region 56356	303 bp upstream
Tssr56357	transcription start site region 56357	315 bp upstream
Tssr56358	transcription start site region 56358	333 bp upstream
Tssr56359	transcription start site region 56359	348 bp upstream
Tssr56360	transcription start site region 56360	385 bp upstream
Tssr60848	transcription start site region 60848	1234 bp upstream
Tssr60849	transcription start site region 60849	280 bp upstream
Tssr60850	transcription start site region 60850	227 bp upstream
Tssr60851	transcription start site region 60851	212 bp downstream
Tssr60852	transcription start site region 60852	255 bp downstream
Tssr60853	transcription start site region 60853	265 bp downstream
Tssr60854	transcription start site region 60854	284 bp downstream
Tssr60855	transcription start site region 60855	317 bp downstream
Tssr60856	transcription start site region 60856	355 bp downstream
Tssr60857	transcription start site region 60857	384 bp downstream