rs236634660 SNP Detail

Summary

• ID
  rs236634660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67622233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTATAGA GCAAGTTGAG
  GGGTGAAGTG GTTTTTTGGA GGGGGTATGG GTGTGTGGAG AGGGCATTCT AGGCATGTCA
  GACTACCTTC TGCAGTGAGC CGTGGCAGGT CCCAAAAGCG GGACCCGGTA AAGGTGCACA
  AGGCCCACAC TGGTGATTCA TGGGCTATCA AAGTGACATC ACCTATCTTT TCCCTGGGGG
  Y
  GGGGGGGGGG TTACTGGGAG ATGTGTGGAA GTCCCCTGAG AATCTGAACT TCTTAGAGAG
  GCACAGAGGG TTGCTTGGAA TCATGGCAGC TCCTGGAGAG CTGGGGTTGG AGCTGGCTCT
  GCAGGGGTGT GGGGAGGCTT TTTCTGCATC CTAAAAAGTC TTCGATGTTT TATTTATTTT
  ATTATTAAAA AATACATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss377912779	MGP_WTSI_9_67562758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs236634660					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377912779	MGP_WTSI_9_67562758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67622233 () rs orientation: forward

Symbol	Name	Function Class
Gm67856	predicted gene, 67856	within coordinates
Tssr90351	transcription start site region 90351	1455 bp upstream