rs236636336 SNP Detail

Summary

• ID
  rs236636336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:135499862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctcaCATGC AGGGAAAGCA GGCCTAAAAT
  ACTACCCCAA GCCCTCAGCT TACAAGcagc aatatcagaa tgagttgtta gagatggaga
  acatatgatt ttacttctgt cttgtctaat gaaaatctgc attttaaaaa gcctttcagg
  Y
  agttcatgtg cCCGGTTTGC GGCACTCTCA AAAGCAGTCT TAACACACTG GCATGAAGAC
  CCTGACCAGT GCAGTATCAG CTTTCTCTGG CATCTTTATT CTCTTTTTAA CCTTGGTGGA
  AAAGCTGATC TGGCTTAGTG AATGTTTCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320517356	CHEV_2_135483678	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236636336					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:135499862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12321	CpG island 12321	563 bp proximal
Gm75609	predicted gene, 75609	1200 bp upstream
Plcb4	phospholipase C, beta 4	1069 bp upstream
Rr38677	regulatory region 38677	1662 bp distal
Rr55690	regulatory region 55690	138 bp proximal
Tssr20369	transcription start site region 20369	1217 bp upstream
Tssr20370	transcription start site region 20370	1351 bp upstream
Tssr20371	transcription start site region 20371	1598 bp upstream
Tssr20372	transcription start site region 20372	1651 bp upstream
Tssr20373	transcription start site region 20373	1683 bp upstream
Tssr20374	transcription start site region 20374	1743 bp upstream