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rs236654039 SNP Detail
Summary
  • ID
    rs236654039
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128728 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTGTG TAGCCCTGGC TGTCCTGGAA
Y
TCACTCTGTA GGCCAGGCTG GCCCC                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss641462013 FVB_NJ_7_51734674 EVA_MGPV3 EVA_MGPV3 f SNP C C C T C T T T C C C C T T T T T T C C C T C C C C C C T T C C C C C C T T C C C T C C T T C T C T C T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236654039 SNP C C C T C T T T C C C C T T T T T T C C C T C C C C C C T T C C C C C C T T C C C T C C T T C T C T C T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641462013 FVB_NJ_7_51734674 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128728 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1925 bp downstream
Tssr2225 transcription start site region 2225 1885 bp downstream
Tssr2226 transcription start site region 2226 1359 bp downstream
Tssr2227 transcription start site region 2227 284 bp downstream
Tssr2228 transcription start site region 2228 774 bp upstream
Tssr2229 transcription start site region 2229 1050 bp upstream
Tssr2230 transcription start site region 2230 1229 bp upstream
Tssr2231 transcription start site region 2231 1362 bp upstream
Tssr2232 transcription start site region 2232 1537 bp upstream
Tssr2233 transcription start site region 2233 1570 bp upstream
Tssr2234 transcription start site region 2234 1729 bp upstream
Tssr66242 transcription start site region 66242 1971 bp downstream
Tssr66243 transcription start site region 66243 1957 bp downstream
Tssr66244 transcription start site region 66244 1906 bp downstream
Tssr66245 transcription start site region 66245 1844 bp downstream
Tssr66246 transcription start site region 66246 1816 bp downstream
Tssr66247 transcription start site region 66247 1769 bp downstream
Tssr66248 transcription start site region 66248 1728 bp downstream
Tssr66249 transcription start site region 66249 1705 bp downstream
Tssr66250 transcription start site region 66250 1686 bp downstream
Tssr66251 transcription start site region 66251 1661 bp downstream
Tssr66252 transcription start site region 66252 1630 bp downstream
Tssr66253 transcription start site region 66253 1602 bp downstream
Tssr66254 transcription start site region 66254 1554 bp downstream
Tssr66255 transcription start site region 66255 1527 bp downstream
Tssr66256 transcription start site region 66256 1478 bp downstream
Tssr66257 transcription start site region 66257 1467 bp downstream
Tssr66258 transcription start site region 66258 1424 bp downstream
Tssr66259 transcription start site region 66259 1388 bp downstream
Tssr66260 transcription start site region 66260 1281 bp downstream
Tssr66261 transcription start site region 66261 1260 bp downstream
Tssr66262 transcription start site region 66262 1253 bp downstream
Tssr66263 transcription start site region 66263 1241 bp downstream
Tssr66264 transcription start site region 66264 1217 bp downstream
Tssr66265 transcription start site region 66265 1174 bp downstream
Tssr66266 transcription start site region 66266 1157 bp downstream
Tssr66267 transcription start site region 66267 1120 bp downstream
Tssr66268 transcription start site region 66268 1104 bp downstream
Tssr66269 transcription start site region 66269 1068 bp downstream
Tssr66270 transcription start site region 66270 1033 bp downstream
Tssr66271 transcription start site region 66271 1001 bp downstream
Tssr66272 transcription start site region 66272 949 bp downstream
Tssr66273 transcription start site region 66273 931 bp downstream
Tssr66274 transcription start site region 66274 926 bp downstream
Tssr66275 transcription start site region 66275 906 bp downstream
Tssr66276 transcription start site region 66276 886 bp downstream
Tssr66277 transcription start site region 66277 866 bp downstream
Tssr66278 transcription start site region 66278 822 bp downstream
Tssr66279 transcription start site region 66279 777 bp downstream
Tssr66280 transcription start site region 66280 755 bp downstream
Tssr66281 transcription start site region 66281 715 bp downstream
Tssr66282 transcription start site region 66282 698 bp downstream
Tssr66283 transcription start site region 66283 684 bp downstream
Tssr66284 transcription start site region 66284 672 bp downstream
Tssr66285 transcription start site region 66285 658 bp downstream
Tssr66286 transcription start site region 66286 619 bp downstream
Tssr66287 transcription start site region 66287 583 bp downstream
Tssr66288 transcription start site region 66288 558 bp downstream
Tssr66289 transcription start site region 66289 476 bp downstream
Tssr66290 transcription start site region 66290 438 bp downstream
Tssr66291 transcription start site region 66291 412 bp downstream
Tssr66292 transcription start site region 66292 380 bp downstream
Tssr66293 transcription start site region 66293 358 bp downstream
Tssr66294 transcription start site region 66294 334 bp downstream
Tssr66295 transcription start site region 66295 69 bp downstream
Tssr66296 transcription start site region 66296 61 bp upstream
Tssr66297 transcription start site region 66297 104 bp upstream
Tssr66298 transcription start site region 66298 129 bp upstream
Tssr66299 transcription start site region 66299 198 bp upstream
Tssr66300 transcription start site region 66300 205 bp upstream
Tssr66301 transcription start site region 66301 229 bp upstream
Tssr66302 transcription start site region 66302 243 bp upstream
Tssr66303 transcription start site region 66303 284 bp upstream
Tssr66304 transcription start site region 66304 292 bp upstream
Tssr66305 transcription start site region 66305 302 bp upstream
Tssr66306 transcription start site region 66306 336 bp upstream
Tssr66307 transcription start site region 66307 393 bp upstream
Tssr66308 transcription start site region 66308 446 bp upstream
Tssr66309 transcription start site region 66309 467 bp upstream
Tssr66310 transcription start site region 66310 505 bp upstream
Tssr66311 transcription start site region 66311 582 bp upstream
Tssr66312 transcription start site region 66312 598 bp upstream
Tssr66313 transcription start site region 66313 619 bp upstream
Tssr66314 transcription start site region 66314 627 bp upstream
Tssr66315 transcription start site region 66315 647 bp upstream
Tssr66316 transcription start site region 66316 706 bp upstream
Tssr66317 transcription start site region 66317 718 bp upstream
Tssr66318 transcription start site region 66318 763 bp upstream
Tssr66319 transcription start site region 66319 786 bp upstream
Tssr66320 transcription start site region 66320 813 bp upstream
Tssr66321 transcription start site region 66321 831 bp upstream
Tssr66322 transcription start site region 66322 851 bp upstream
Tssr66323 transcription start site region 66323 897 bp upstream
Tssr66324 transcription start site region 66324 926 bp upstream
Tssr66325 transcription start site region 66325 956 bp upstream
Tssr66326 transcription start site region 66326 997 bp upstream
Tssr66327 transcription start site region 66327 1011 bp upstream
Tssr66328 transcription start site region 66328 1027 bp upstream
Tssr66329 transcription start site region 66329 1066 bp upstream
Tssr66330 transcription start site region 66330 1085 bp upstream
Tssr66331 transcription start site region 66331 1099 bp upstream
Tssr66332 transcription start site region 66332 1120 bp upstream
Tssr66333 transcription start site region 66333 1168 bp upstream
Tssr66334 transcription start site region 66334 1180 bp upstream
Tssr66335 transcription start site region 66335 1189 bp upstream
Tssr66336 transcription start site region 66336 1198 bp upstream
Tssr66337 transcription start site region 66337 1216 bp upstream
Tssr66338 transcription start site region 66338 1272 bp upstream
Tssr66339 transcription start site region 66339 1323 bp upstream
Tssr66340 transcription start site region 66340 1368 bp upstream
Tssr66341 transcription start site region 66341 1413 bp upstream
Tssr66342 transcription start site region 66342 1475 bp upstream
Tssr66343 transcription start site region 66343 1507 bp upstream
Tssr66344 transcription start site region 66344 1652 bp upstream
Tssr66345 transcription start site region 66345 1685 bp upstream
Tssr66346 transcription start site region 66346 1741 bp upstream
Tssr66347 transcription start site region 66347 1779 bp upstream
Tssr66348 transcription start site region 66348 1820 bp upstream
Tssr66349 transcription start site region 66349 1844 bp upstream
Tssr66350 transcription start site region 66350 1872 bp upstream
Tssr66351 transcription start site region 66351 1880 bp upstream
Tssr66352 transcription start site region 66352 1916 bp upstream
Tssr66353 transcription start site region 66353 1990 bp upstream
Tssr72199 transcription start site region 72199 1821 bp upstream
Tssr72200 transcription start site region 72200 863 bp upstream
Tssr72201 transcription start site region 72201 353 bp upstream
Tssr72202 transcription start site region 72202 489 bp downstream
Tssr72203 transcription start site region 72203 875 bp downstream
Tssr72204 transcription start site region 72204 1471 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory