rs236660556 SNP Detail

Summary

• ID
  rs236660556
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52274409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATATGTT ATAAAAATGT
  AAATGGATGT AATTTCCTCC CCTCCCCTAG CCAAGGTATT TCAAGACCAA ATCTTTGTGT
  CCCAATAATT GAATAGCTGA AACTTTTTCC CACTGCAAGA TATTCTTTCC TTACTTATCT
  TGACTCTTTA TATAGATATT TATAGAAAGT AAAATTCCAA CAAAAAAAAA AAGAGGCATA
  K
  CTGTGTATGA TGTTCTTCCG AGTACTTGAT TCCTCTCAGG GAAACTTGCA AACCACCTCT
  TAGCAGTTCA TATTGTTTTC TTTCTGAATC TCCTCTTTCT CAGGCCAGTT TTTTTTTCCA
  AGAGTTTGCA CTTCCTCTTC TAAATTCCCC ACGTGAGGCC CAACACCTCT GTGGAATAAA
  CATTTCCACA GCAACCCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364927596	MGP_WTSI_5_52508306	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	G	G	G	G	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236660556					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	G	G	G	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364927596	MGP_WTSI_5_52508306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52274409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15852	CpG island 15852	416 bp distal
Gm40302	predicted gene, 40302	within coordinates
Gm43177	predicted gene 43177	within coordinates
Gm71495	predicted gene, 71495	1364 bp upstream
Rr611385	regulatory region 611385	1375 bp distal
Rr611386	regulatory region 611386	1190 bp distal
Rr611387	regulatory region 611387	248 bp distal
Rr611388	regulatory region 611388	820 bp distal
Tssr50981	transcription start site region 50981	1276 bp upstream
Tssr50982	transcription start site region 50982	1219 bp upstream
Tssr50983	transcription start site region 50983	1150 bp upstream
Tssr50984	transcription start site region 50984	1088 bp upstream