rs236661561 SNP Detail

Summary

• ID
  rs236661561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71230544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTACGGC TGTGAGCTGC
  CATGTAGGTG CTGGGAATAC AACCTGGGTC CTCTAGAAGA GCAGCCAGTG CTTTTAATCA
  TTGATTCCTT TGGCTTTATT ATTTGAAACA GGGTCTTGTT ATTAGCCCAG GCTGTATCTG
  AACTCATGAT CCTTCTGCTT CGTGCCTCCC CACGCCCCCA CCTCCAAGTG TTAGGATTAC
  R
  TGTGTATACA GCCATGCCTG GAAACACTTC ATTTTAGAGA TGAGATTTTG CCCTATTGCC
  CTAGCCAGGA TCCCAGCCTG CTAGGTAGCT GGGATGCAGG CTGGCTTGGA TTAAGTGTTT
  AACCAAACCC CTATACAGCC AACAAAACTC ACTTAGATGA TATCGAGCCA TCAGTTTTTC
  CCTACCCCCA GCCACTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375106127	MGP_WTSI_8_73301799	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236661561					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375106127	MGP_WTSI_8_73301799	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71230544 () rs orientation: forward

Symbol	Name	Function Class
2010320M18Rik	RIKEN cDNA 2010320M18 gene	294 bp downstream
Cpgi20500	CpG island 20500	177 bp distal
Mast3	microtubule associated serine/threonine kinase 3	217 bp downstream
Pik3r2	phosphoinositide-3-kinase regulatory subunit 2	1188 bp upstream
Rr186787	regulatory region 186787	within coordinates
Rr368551	regulatory region 368551	492 bp downstream
Rr400915	regulatory region 400915	986 bp downstream
Tssr77827	transcription start site region 77827	1127 bp downstream
Tssr77828	transcription start site region 77828	1071 bp downstream
Tssr77829	transcription start site region 77829	1003 bp downstream
Tssr77830	transcription start site region 77830	536 bp downstream
Tssr81673	transcription start site region 81673	1260 bp upstream
Tssr81674	transcription start site region 81674	1184 bp upstream
Tssr81675	transcription start site region 81675	1169 bp upstream