rs236664636 SNP Detail

Summary

• ID
  rs236664636
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72220158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGCGGGGG ATGGGACAGC AAGCCCAAGA
  GTTATAACCC CGCATTCATA TGTGAGAGTT TGCCTATGCT TGTTGTCGTC TATGGTCGAA
  GTGTCTGGGG GAGAGTACTG AAGTCAAAGC CATTTCCAGA CCCTTCTCTG TACACATTCT
  K
  TGTTGAGAAG CTTTGGTCTC TTTCCAGaaa aaaaatatct ttttgaaata tatatatata
  tatatGCATA GTGTTAGCCT TGCCATGTGT AGAACACTGT ATCTGCTAGC GCATGGCATG
  GGGAAACCTA TAAAACATGT TAGACATTAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342251	CHEV_2_72227871	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236664636					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72220158 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	67 bp proximal
Rr558966	regulatory region 558966	355 bp proximal
Rr558967	regulatory region 558967	1145 bp proximal
Tssr18338	transcription start site region 18338	587 bp upstream
Tssr18339	transcription start site region 18339	905 bp upstream
Tssr18340	transcription start site region 18340	927 bp upstream
Tssr18341	transcription start site region 18341	942 bp upstream