rs236675224 SNP Detail

Summary

• ID
  rs236675224
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157403192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGCGCAA AAGTGCTTCT
  CTTAAAGCCA AACTGGAAGA AAGCGCTTTG TGCAAAAAAA AACTATCTAC CCCAAGAGCT
  CCCTTTGCAG GAATCCTGCT AAAGGAATCC TTTGCCAAAG GAATCGCATA TTTCCTTCAA
  GGTGTTCCTG GAATGCTGCA TTTACTGGGT AGGATTCGCT TTTCGAAATC CTCCAGGGAC
  M
  CAGCCCATTG CGAGAAGTGA GGTATACTTA AGTTGTGGGT CCAATCAGCT TGCAGCCATG
  CAGCTCTCAG CACAGTTGGA AAAGCTCCAG CTGCCCTGAC TGGTGGACAA GCTGTGCCTC
  GGCCGCCACT CCAGGCTATG CTGGACAGGC GGGCGGGGCA GGGGGCGGGG CCGGGCGGGC
  AAAGCAGCAG CAGCAAGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262046	MGP_WTSI_2_157387008	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236675224					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262046	MGP_WTSI_2_157387008	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157403192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Blcap	bladder cancer associated protein			Intron
Cpgi12575	CpG island 12575			678 bp distal
Cpgi12576	CpG island 12576			188 bp proximal
Gm56190	predicted gene, 56190			1089 bp downstream
Nnat	neuronatin			Coding-NonSynonymous
				Coding-Synonymous
				Intron
Rr568543	regulatory region 568543			1132 bp distal
Rr568544	regulatory region 568544			1075 bp proximal
Tssr721	transcription start site region 721			1169 bp downstream
Tssr21268	transcription start site region 21268			1153 bp downstream
Tssr21269	transcription start site region 21269			668 bp downstream
Tssr21270	transcription start site region 21270			597 bp downstream
Tssr21271	transcription start site region 21271			483 bp downstream
Tssr21272	transcription start site region 21272			444 bp downstream
Tssr21273	transcription start site region 21273			203 bp upstream
Tssr21274	transcription start site region 21274			445 bp upstream
Tssr21275	transcription start site region 21275			500 bp upstream
Tssr21276	transcription start site region 21276			601 bp upstream
Tssr21277	transcription start site region 21277			630 bp upstream
Tssr21278	transcription start site region 21278			665 bp upstream
Tssr21279	transcription start site region 21279			757 bp upstream
Tssr21280	transcription start site region 21280			836 bp upstream
Tssr21281	transcription start site region 21281			883 bp upstream
Tssr21282	transcription start site region 21282			1008 bp upstream
Tssr21283	transcription start site region 21283			1022 bp upstream
Tssr27183	transcription start site region 27183			389 bp upstream
Tssr27184	transcription start site region 27184			299 bp upstream
Tssr27185	transcription start site region 27185			580 bp downstream
Tssr27186	transcription start site region 27186			707 bp downstream