rs236676001 SNP Detail

Summary

• ID
  rs236676001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85416099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTGGCCC GCCCTCTTTG
  CCAACATGGC GGCTCCCAGG CCCTAATGCG AGAAGCATGC ACCGTGACTC GTTGGATCCT
  GTGAGCGGAA GGGAGACGCT TGTCCGGGTG GGTGGGTGGG TGGGTGGGTG TGTGGGTGTG
  GTGGGAAACC TGAGCCGAAG AGAGAAGTTT GTCCGGGTGT GTGTGTTGGG AAATCTGAGC
  Y
  GCGGGCCTTA GCCTCTGTTG GGTCCAGTGC CCTCGAGAAC GCAGGATGTT ATGGAGGCCA
  CCGGATTTTA GTTTCTACTT TATAGATATA GAGGCCACCC CCGCCCCAGA ATGCAGCTCT
  CTGACCTCCC TATGCCTTTT CCCTTCTCTC GAAAACGGCA GGCGGGTTGA GGCGCCCGCG
  GATGTCCCTC GCGAGGACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404323	MGP_WTSI_8_87213369	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236676001					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404323	MGP_WTSI_8_87213369	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85416099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	1434 bp distal
Cpgi20706	CpG island 20706	11 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1571 bp upstream
Rr666573	regulatory region 666573	1579 bp distal
Rr666575	regulatory region 666575	1235 bp distal
Rr666576	regulatory region 666576	within coordinates
Rr666577	regulatory region 666577	227 bp distal
Rr666578	regulatory region 666578	322 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	167 bp downstream
Tssr78431	transcription start site region 78431	152 bp downstream
Tssr82112	transcription start site region 82112	1899 bp upstream
Tssr82113	transcription start site region 82113	1851 bp upstream
Tssr82114	transcription start site region 82114	1586 bp upstream
Tssr82115	transcription start site region 82115	1560 bp upstream