rs236678675 SNP Detail

Summary

• ID
  rs236678675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20782957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA TGTGGAGCAG AAGTGAAGGC
  Y
  GAGGTCTTGG AGACACCTTT TACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323592829	CHEV_11_20732960	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236678675					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20782957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	1277 bp distal
Gm12037	predicted gene 12037	1015 bp upstream
Lgalsl	galectin like	1901 bp upstream
Rr443483	regulatory region 443483	1561 bp distal
Rr443484	regulatory region 443484	1026 bp distal
Rr443485	regulatory region 443485	757 bp distal
Tssr107046	transcription start site region 107046	1904 bp upstream
Tssr107047	transcription start site region 107047	1883 bp upstream
Tssr107048	transcription start site region 107048	1768 bp upstream
Tssr107049	transcription start site region 107049	1738 bp upstream
Tssr107050	transcription start site region 107050	1692 bp upstream
Tssr107051	transcription start site region 107051	1625 bp upstream