rs236680906 SNP Detail

Summary

• ID
  rs236680906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:59022630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAGTAAG TCTCTGCCCC ACAGGCCTAT
  GTGCTGGAGG CTTGTTCACC AGCTCACAgg gggggggggg gggggggggg gAAGAGTGCC
  CAATAGGAGG TATTTTGGTC ACTGAAGGAA GCATTTCTTG ACGAGAACTG TAGAATCAGT
  Y
  TTTCTTACTG CAGCGTCACA CAGGCCTAAA GCCATAGGCC ATAAACCGCA ACCTCTGAAC
  GATGAGCTGA AATAGAGCTT TCTCTGTTGG GGTGAAGGAA ATATGACTAA CATTTGGATA
  ATGCCATTCT GTTTTGGACC TCATACAACC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324055321	CHEV_12_60076831	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236680906					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:59022630 () rs orientation: forward

Symbol	Name	Function Class
Rr256936	regulatory region 256936	430 bp distal
Rr256937	regulatory region 256937	1171 bp proximal
Sec23a	SEC23 homolog A, COPII coat complex component	within coordinates
Tssr116440	transcription start site region 116440	510 bp downstream